PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0066.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 230aa    MW: 25356.3 Da    PI: 7.4368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.1e-1895145255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+++AeIrd + ng   r+++g+f++ae Aa a+++a+ +++g
  Kalax.0052s0066.1.p  95 SYRGVRRRP-WGKFAAEIRDSTRNG--IRVWIGTFDSAEAAALAYDQAAFAMKG 145
                          69*******.**********44465..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.28E-1894154No hitNo description
Gene3DG3DSA:3.30.730.103.2E-2995154IPR001471AP2/ERF domain
PfamPF008476.1E-1395145IPR001471AP2/ERF domain
SMARTSM003802.8E-3495159IPR001471AP2/ERF domain
PROSITE profilePS5103222.53795153IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-2195155IPR016177DNA-binding domain
PRINTSPR003671.0E-996107IPR001471AP2/ERF domain
PRINTSPR003671.0E-9119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MASKFPPFNC SVSSWESDFS PQSSFGSWES DFSWESYSLM PDSLSMSIHS MPLHSTESTY  60
PLTAGVPAER AECETEEYKE VTSSAAERKA GKQKSYRGVR RRPWGKFAAE IRDSTRNGIR  120
VWIGTFDSAE AAALAYDQAA FAMKGSAATL NFPAEVVRES MSGVMDAGER GSPVLALKRR  180
HSMRRRSASG CSRVGKKLKE AGEEQRKQSV VVFEDLGAEY LEQLLSSYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2792156266ATERF1
3gcc_A2e-2792156266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093429.15e-58Ethylene-responsive transcription factor 1B
SwissprotQ8LDC85e-55ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLD8VD377e-64D8VD37_ACTDE; Ethylene response factor 10
STRINGPGSC0003DMT4000348732e-54(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-45ethylene response factor 1